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Researchers Harness DNA for Tiny Motors That Could Widen Use of Genetic Code

Portending a possible role for DNA beyond biology, a team of researchers at
Bell Laboratories and Oxford University has fashioned molecular-sized
motors out of the chemical that stores the genetic code.

The DNA motors resemble tweezers that are so small they could potentially
pick up a single atom, with 30 trillion of the devices fitting into a drop
of water. The molecular tweezers are opened and closed by other DNA that
serves as "fuel."

The development is part of an effort, still in its infancy, to harness DNA
as a structural and electronic material that might one day be used to make
ultratiny computers or mechanical devices, like a robot that could cruise
through the bloodstream to repair an injury.

"As far as we know, DNA is not used this way in the body," said Bernard
Yurke, a physicist at Bell Labs who led the work, described in today's
issue of Nature. "We're using DNA in a very nonbiological way, as a
structural material and as a fuel in some sense."

DNA could be attractive for such molecular construction because a strand of
DNA will stick only to another strand with a corresponding sequence of
bases, the chemical units that form the genetic code. So DNA strands in
solution could automatically assemble themselves into a structure. "Think
of it as a smart glue," Dr. Yurke said.

He said the DNA tweezers themselves might one day be used to pick up
particular ions for molecular construction or to provide motion to a tiny
machine. But Bell Labs, which is based in Murray Hill, N.J., and is part of
Lucent Technologies, is more interested in computing. For that, the
tweezers are not of direct interest but do demonstrate the idea of
self-assembly.

In the future it might be possible to attach electronic components to DNA
and have the DNA strands link together to form a computer with far more
speed and information storage capacity than exists today, he said.

Nadrian C. Seeman, a professor of chemistry at New York University, has
used DNA to make three-dimensional "stick figures" like cubes and also a
mechanical switch that flips between two positions when a chemical is added
to the solution.

Nanogen, a biotechnology company in San Diego, received a patent this year
for a method of using DNA connected to fluorescent dyes to make an optical
memory that could potentially hold far more information in a given space
than can a compact disc.

But experts say it will be a decade or more before practical devices can be
made of DNA. And some experts say other chemicals might prove to be more
useful than DNA.

"It's going to be cute little laboratory experiments," James M. Tour,
professor of chemistry and a molecular electronics researcher at Rice
University, said of work using DNA. "I'm not sure how viable it's going to
be." One problem, he said, is that DNA works best in solution, not solid
form. DNA also does not conduct electricity well, limiting its direct use
in electronic devices.

The number of electronic components that can fit on a silicon chip has been
doubling every 18 months or so, greatly increasing computer speed and
storage capacity. But physicists say there will eventually be limits to how
small electronic components can be made using existing technology, so that
new approaches will be needed.

DNA is nature's method of storing huge amounts of information in a tiny
space. The space between each letter in the genetic code is 0.34 nanometer,
or billionth of a meter. Existing electronics technology makes features
about 100 nanometers in size, more than 100 times as large.

For several years scientists have been experimenting with using DNA
directly for computation. A problem to be solved can be encoded in a
sequence of bases. The DNA is then put into a test tube, and the DNA
strands match up in a way that produces a strand encoding the solution.

But some experts say such chemical computers will be slower and more
cumbersome to use than are electronic ones.

So Dr. Yurke and others are looking more at using DNA as a scaffolding to
build electronic computers.

DNA is a double helix, a twisted ladder with each rung made of two of the
four bases in the genetic code. The base represented by the letter A always
pairs with T, and C with G, so when the ladder is split down the middle,
each half will bind only with another half that has the complementary
sequence of bases.

The molecular tweezers are made by putting three specific strands of DNA
into a test tube. The strands stick together to form two stiff
double-stranded arms connected by a short single strand that acts as a
hinge. A single strand dangles off the end of each arm.

To close the tweezers, a single strand of DNA that is complementary to both
dangling ends is put into solution. This "fuel" DNA binds to those ends and
pulls them together, almost like tying a shoe. To open the hinge, a strand
complementary to the fuel strand is put into the solution. It eventually
out-competes the tweezers' arms to bind to the fuel DNA. This
double-stranded "waste" product floats away, like the exhaust from an engine.

Others taking part in the work were Andrew J. Turberfield, a physicist at
Oxford; Allen P. Mills Jr. and Friedrich C. Simmel of Bell Labs; and
Jennifer Neumann, a graduate student at Rutgers University.


By ANDREW POLLACK
Copyright 2000 The New York Times Company
"http://www.nytimes.com/library/tech/00/08/biztech/articles/10dna.html"
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