This is primarily a bug fix related release. We've re-enabled the --recover option to annotation which was accidentally removed during the 3.0 series release. There was a minor bug where virtual evidence was 1 base pair overzealous in selecting virtual evidence for consideration. We do not suspect this a source of any errors. It's highly recommended to upgrade to avoid these bugs in the future.
Segway (and Genomedata) are both available on Bioconda. With Bioconda installed, to install segway run 'conda install segway'. Segway can still be installed through older methods using "pip", see the Quickstart Guide for details.
Here is a full list of changes made since the last announcement here:
To see all known bugs head to the issue tracker at https://github.com/hoffmangroup/segway/issues